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Charge assisted assembly of zwitterionic pyridone hydrates

Authorized Users Only
2021
Authors
Mašulović, Aleksandra D.
Lađarević, Jelena M.
Radovanović, Lidija D.
Vitnik, Željko
Vitnik, Vesna
Rogan, Jelena R.
Mijin, Dušan
Article (Published version)
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Abstract
Two pyridone derivatives, bearing the pyridinium moiety (1), or dimethylpyridinium moiety (2), have been synthesized and their crystal structures have been determined. The compounds crystalize in hydrated zwitterionic forms with either two (1•2H2O) or four (2•4H2O) water molecules. The zwitterionic networks contain different types of water clusters, generated into channels, incorporating them into the network by sandwiching. The type of channel depends on the crystal lattice and the nature of non-covalent interactions established between zwitterions as well as the number of water molecules incorporated into the architecture. 1 affords tubes filled in with water channels formed by water tetramers, contrary to 2, which affords a layered network altering the zwitterionic layer and the layer formed by water tetramers and hexamers. A detailed study of intermolecular interactions of both crystal structures and a quantification of interaction energies has been performed using PIXEL lattice en...ergy calculations, giving an insight to a quantitative evaluation of interactions through Coulombic, disperse, repulsion and polarization energies. The strongest pairwise, in both structures, is found to be a dipole–dipole interaction between oppositely charged heterocyclic rings. The differences in the crystal packings of these hydrates have been elucidated by the fingerplot analysis. The comparative studies between experimental and calculated (DFT) data of molecules 1•H2O and 2•4H2O for systems of different complexity are performed. Furthermore, correlations of experimental and calculated bond lengths and the simulation of compound solvation with the CPCM model are done.

Keywords:
Computational chemistry / Hydrates / Pyridone / Stacking interactions / Zwitterions / Molecules / Network layers / Crystals structures / Pyridinium / Stacking interaction / Synthesised / Water molecule / Water tetramers / Zwitterion / Zwitterionic forms / Zwitterionics / Hydration
Source:
Journal of Molecular Structure, 2021, 1237, 130419-
Publisher:
  • Elsevier
Funding / projects:
  • Ministry of Education, Science and Technological Development, Republic of Serbia, Grant no. 200026 (University of Belgrade, Institute of Chemistry, Technology and Metallurgy - IChTM) (RS-200026)
  • Ministry of Education, Science and Technological Development, Republic of Serbia, Grant no. 200135 (University of Belgrade, Faculty of Technology and Metallurgy) (RS-200135)
  • Ministry of Education, Science and Technological Development, Republic of Serbia, Grant no. 200287 (Innovation Center of the Faculty of Technology and Metallurgy) (RS-200287)
Note:
  • The peer-reviewed version of the article: https://cer.ihtm.bg.ac.rs/handle/123456789/4507
  • Supporting information: https://cer.ihtm.bg.ac.rs/handle/123456789/4508
  • Related crystallographic data (CCDC 2057269): https://cer.ihtm.bg.ac.rs/handle/123456789/4509
  • Related crystallographic data (CCDC 2057270): https://cer.ihtm.bg.ac.rs/handle/123456789/4510
Related info:
  • Version of
    https://cer.ihtm.bg.ac.rs/handle/123456789/4507
  • Referenced by
    https://cer.ihtm.bg.ac.rs/handle/123456789/4508
  • Referenced by
    https://cer.ihtm.bg.ac.rs/handle/123456789/4509
  • Referenced by
    https://cer.ihtm.bg.ac.rs/handle/123456789/4510

DOI: 10.1016/j.molstruc.2021.130419

ISSN: 0022-2860

WoS: 000646451900001

Scopus: 2-s2.0-85104288082
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https://cer.ihtm.bg.ac.rs/handle/123456789/4506
Collections
  • Radovi istraživača / Researchers' publications
Institution/Community
IHTM
TY  - JOUR
AU  - Mašulović, Aleksandra D.
AU  - Lađarević, Jelena M.
AU  - Radovanović, Lidija D.
AU  - Vitnik, Željko
AU  - Vitnik, Vesna
AU  - Rogan, Jelena R.
AU  - Mijin, Dušan
PY  - 2021
UR  - https://cer.ihtm.bg.ac.rs/handle/123456789/4506
AB  - Two pyridone derivatives, bearing the pyridinium moiety (1), or dimethylpyridinium moiety (2), have been synthesized and their crystal structures have been determined. The compounds crystalize in hydrated zwitterionic forms with either two (1•2H2O) or four (2•4H2O) water molecules. The zwitterionic networks contain different types of water clusters, generated into channels, incorporating them into the network by sandwiching. The type of channel depends on the crystal lattice and the nature of non-covalent interactions established between zwitterions as well as the number of water molecules incorporated into the architecture. 1 affords tubes filled in with water channels formed by water tetramers, contrary to 2, which affords a layered network altering the zwitterionic layer and the layer formed by water tetramers and hexamers. A detailed study of intermolecular interactions of both crystal structures and a quantification of interaction energies has been performed using PIXEL lattice energy calculations, giving an insight to a quantitative evaluation of interactions through Coulombic, disperse, repulsion and polarization energies. The strongest pairwise, in both structures, is found to be a dipole–dipole interaction between oppositely charged heterocyclic rings. The differences in the crystal packings of these hydrates have been elucidated by the fingerplot analysis. The comparative studies between experimental and calculated (DFT) data of molecules 1•H2O and 2•4H2O for systems of different complexity are performed. Furthermore, correlations of experimental and calculated bond lengths and the simulation of compound solvation with the CPCM model are done.
PB  - Elsevier
T2  - Journal of Molecular Structure
T1  - Charge assisted assembly of zwitterionic pyridone hydrates
VL  - 1237
SP  - 130419
DO  - 10.1016/j.molstruc.2021.130419
ER  - 
@article{
author = "Mašulović, Aleksandra D. and Lađarević, Jelena M. and Radovanović, Lidija D. and Vitnik, Željko and Vitnik, Vesna and Rogan, Jelena R. and Mijin, Dušan",
year = "2021",
abstract = "Two pyridone derivatives, bearing the pyridinium moiety (1), or dimethylpyridinium moiety (2), have been synthesized and their crystal structures have been determined. The compounds crystalize in hydrated zwitterionic forms with either two (1•2H2O) or four (2•4H2O) water molecules. The zwitterionic networks contain different types of water clusters, generated into channels, incorporating them into the network by sandwiching. The type of channel depends on the crystal lattice and the nature of non-covalent interactions established between zwitterions as well as the number of water molecules incorporated into the architecture. 1 affords tubes filled in with water channels formed by water tetramers, contrary to 2, which affords a layered network altering the zwitterionic layer and the layer formed by water tetramers and hexamers. A detailed study of intermolecular interactions of both crystal structures and a quantification of interaction energies has been performed using PIXEL lattice energy calculations, giving an insight to a quantitative evaluation of interactions through Coulombic, disperse, repulsion and polarization energies. The strongest pairwise, in both structures, is found to be a dipole–dipole interaction between oppositely charged heterocyclic rings. The differences in the crystal packings of these hydrates have been elucidated by the fingerplot analysis. The comparative studies between experimental and calculated (DFT) data of molecules 1•H2O and 2•4H2O for systems of different complexity are performed. Furthermore, correlations of experimental and calculated bond lengths and the simulation of compound solvation with the CPCM model are done.",
publisher = "Elsevier",
journal = "Journal of Molecular Structure",
title = "Charge assisted assembly of zwitterionic pyridone hydrates",
volume = "1237",
pages = "130419",
doi = "10.1016/j.molstruc.2021.130419"
}
Mašulović, A. D., Lađarević, J. M., Radovanović, L. D., Vitnik, Ž., Vitnik, V., Rogan, J. R.,& Mijin, D.. (2021). Charge assisted assembly of zwitterionic pyridone hydrates. in Journal of Molecular Structure
Elsevier., 1237, 130419.
https://doi.org/10.1016/j.molstruc.2021.130419
Mašulović AD, Lađarević JM, Radovanović LD, Vitnik Ž, Vitnik V, Rogan JR, Mijin D. Charge assisted assembly of zwitterionic pyridone hydrates. in Journal of Molecular Structure. 2021;1237:130419.
doi:10.1016/j.molstruc.2021.130419 .
Mašulović, Aleksandra D., Lađarević, Jelena M., Radovanović, Lidija D., Vitnik, Željko, Vitnik, Vesna, Rogan, Jelena R., Mijin, Dušan, "Charge assisted assembly of zwitterionic pyridone hydrates" in Journal of Molecular Structure, 1237 (2021):130419,
https://doi.org/10.1016/j.molstruc.2021.130419 . .

Related items

Showing items related by title, author, creator and subject.

  • CCDC 2057270: Experimental Crystal Structure Determination. Crystallographic data for "Charge assisted assembly of zwitterionic pyridone hydrates" 

    Radovanović, Lidija D. (The Cambridge Crystallographic Data Centre (CCDC), 2021)
  • CCDC 2057269: Experimental Crystal Structure Determination. Crystallographic data for "Charge assisted assembly of zwitterionic pyridone hydrates" 

    Radovanović, Lidija D. (The Cambridge Crystallographic Data Centre (CCDC), 2021)
  • Supporting material for: "Charge assisted assembly of zwitterionic pyridone hydrates" 

    Mašulović, Aleksandra D.; Lađarević, Jelena M.; Radovanović, Lidija D.; Vitnik, Željko; Vitnik, Vesna; Rogan, Jelena R.; Mijin, Dušan (Elsevier, 2021)

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