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dc.creatorGrubišić, Sonja
dc.creatorNiketić, Slobodan R.
dc.date.accessioned2021-03-24T21:21:29Z
dc.date.available2021-03-24T21:21:29Z
dc.date.issued2015
dc.identifier.isbn978-0-12-409547-2
dc.identifier.urihttps://cer.ihtm.bg.ac.rs/handle/123456789/4394
dc.description.abstractThe concept of potential energy surface (PES) for the motion of nuclei has been of central importance in molecular modeling ever since its development in the early 1960s and has been ubiquitous in theoretical, physical, and other branches of chemistry as well. In this article, after a summary of the basic properties of PESs, the different approaches to searching local and global minima are presented and commented with respect to the problem of protein folding. Next, the principles of empirical force field paradigm in actualizing PESs of polyatomic molecules in mathematical analytic form and different methods for PES construction and parameter fitting techniques are given as a prelude to the review of current approaches for simultaneous development of accurate energy hypersurfaces and force fields to execute molecular dynamics (MD) simulations of chemical systems. Finally, a summary of procedures to explore global minima of molecules using MD and Monte Carlo techniques, as well as of the methods to search for transition states and reaction paths on a PES, is given. Keywords Force field; Global minimum; Global optimization; Hessian matrix; Intrinsic reaction coordinate; Molecular dynamics; Monte Carlo; Normal mode analysis; Potential energy surface; Simulated annealing; Transition state; Unconstrained minimization methods.sr
dc.language.isoensr
dc.publisherElseviersr
dc.rightsrestrictedAccesssr
dc.sourceReference Module in Chemistry, Molecular Sciences and Chemical Engineeringsr
dc.subjectnucleisr
dc.subjectproteinsr
dc.subjectForce fieldsr
dc.subjectGlobal minimumsr
dc.subjectGlobal optimizationsr
dc.subjectHessian matrixsr
dc.subjectIntrinsic reaction coordinatesr
dc.subjectMolecular dynamicssr
dc.subjectNormal mode analysissr
dc.subjectUnconstrained minimization methodssr
dc.subjectTransition statesr
dc.subjectSimulated annealingsr
dc.subjectPotential energy surfacesr
dc.titlePotential Energy Surface Evaluation and Fittingsr
dc.typebookPartsr
dc.rights.licenseARRsr
dcterms.abstractНикетић, Слободан Р.; Грубишић, Соња;
dc.identifier.doi10.1016/B978-0-12-409547-2.10846-7
dc.type.versionpublishedVersionsr


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