Malenov, Dušan P.

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Authority KeyName Variants
orcid::0000-0002-3060-3377
  • Malenov, Dušan P. (9)
  • Malenov, Dusan P. (4)
  • Malenov, Dušan (1)
Projects

Author's Bibliography

Study of noncovalent interactions using crystal structure data in the Cambridge Structural Database

Milovanović, Milan R.; Živković, Jelena M.; Ninković, Dragan B.; Blagojević Filipović, Jelena P.; Vojislavljević-Vasilev, Dubravka Z.; Veljković, Ivana S.; Stanković, Ivana M.; Malenov, Dušan P.; Medaković, Vesna; Veljković, Dušan Ž.; Zarić, Snežana D.

(The International Union of Crystallography (IUCr), 2021)

TY  - CONF
AU  - Milovanović, Milan R.
AU  - Živković, Jelena M.
AU  - Ninković, Dragan B.
AU  - Blagojević Filipović, Jelena P.
AU  - Vojislavljević-Vasilev, Dubravka Z.
AU  - Veljković, Ivana S.
AU  - Stanković, Ivana M.
AU  - Malenov, Dušan P.
AU  - Medaković, Vesna
AU  - Veljković, Dušan Ž.
AU  - Zarić, Snežana D.
PY  - 2021
UR  - https://cer.ihtm.bg.ac.rs/handle/123456789/5347
AB  - In the recent review it was point out that the crystal structures in the Cambridge Structural Database (CSD), collected, have contributeto various fields of chemical research such as geometries of molecules, noncovalent interactions of molecules, and large assemblies ofmolecules. The CSD also contributed to the study and the design of biologically active molecules and the study of gas storage anddelivery [1].In our group we use analysis of the crystal structures in the CSD to recognize and characterize new types of noncovalent interactionsand to study already known noncovalent interactions. Based on the data from the CSD we can determine existence of the interactions,frequency of the interactions, and preferred geometries of the interactions in the crystal structures. In addition, we perform quantumchemical calculations to evaluate the energies of the interactions. Based on the calculated potential energy surfaces for theinteractions, we can determine the most stable geometries, as well as stability of various geometries. We also can determine theinteraction energies for the preferred geometries in the crystal structures. In the cases where the most preferred geometries in thecrystal structures are not the most stable geometries at the potential energy surface, one can find significant influence of thesupramolecular structures in the crystals.Using this methodology our group recognized stacking interactions of planar metal-chelate rings; stacking interactions with organicaromatic rings and stacking interactions between two chelate rings. The calculated energies indicate strong stacking interactions ofmetal-chelate rings; the stacking of metal-chelate rings is stronger than stacking between two benzene molecules [2]. The data indicateinfluence of the metal and ligand type in the metal chelate ring on the strength of the interactions. Our results also indicate strongstacking interactions of coordinated aromatic rings [3]. Studies of interactions of coordinated water indicate stronger hydrogen bondsand stronger OH/π interactions of coordinated in comparison to noncoordianted water molecule [4,5]. The calculations on OH/Minteractions between metal ion in square-planar complexes and water molecule indicate that these interactions are among the strongesthydrogen bonds in any molecular system [6].The studies on stacking interactions of benzene molecules in the crystal structures in the CSD show preference for interactions at largehorizontal displacements, while high level quantum chemical calculations indicate significantly strong interactions at large offsets; theenergy is 70% of the strongest stacking geometry [7].
PB  - The International Union of Crystallography (IUCr)
C3  - Acta Crystallographica, section A
T1  - Study of noncovalent interactions using crystal structure data in the Cambridge Structural Database
VL  - A77
SP  - C192
DO  - 10.1107/S0108767321094903
ER  - 
@conference{
author = "Milovanović, Milan R. and Živković, Jelena M. and Ninković, Dragan B. and Blagojević Filipović, Jelena P. and Vojislavljević-Vasilev, Dubravka Z. and Veljković, Ivana S. and Stanković, Ivana M. and Malenov, Dušan P. and Medaković, Vesna and Veljković, Dušan Ž. and Zarić, Snežana D.",
year = "2021",
abstract = "In the recent review it was point out that the crystal structures in the Cambridge Structural Database (CSD), collected, have contributeto various fields of chemical research such as geometries of molecules, noncovalent interactions of molecules, and large assemblies ofmolecules. The CSD also contributed to the study and the design of biologically active molecules and the study of gas storage anddelivery [1].In our group we use analysis of the crystal structures in the CSD to recognize and characterize new types of noncovalent interactionsand to study already known noncovalent interactions. Based on the data from the CSD we can determine existence of the interactions,frequency of the interactions, and preferred geometries of the interactions in the crystal structures. In addition, we perform quantumchemical calculations to evaluate the energies of the interactions. Based on the calculated potential energy surfaces for theinteractions, we can determine the most stable geometries, as well as stability of various geometries. We also can determine theinteraction energies for the preferred geometries in the crystal structures. In the cases where the most preferred geometries in thecrystal structures are not the most stable geometries at the potential energy surface, one can find significant influence of thesupramolecular structures in the crystals.Using this methodology our group recognized stacking interactions of planar metal-chelate rings; stacking interactions with organicaromatic rings and stacking interactions between two chelate rings. The calculated energies indicate strong stacking interactions ofmetal-chelate rings; the stacking of metal-chelate rings is stronger than stacking between two benzene molecules [2]. The data indicateinfluence of the metal and ligand type in the metal chelate ring on the strength of the interactions. Our results also indicate strongstacking interactions of coordinated aromatic rings [3]. Studies of interactions of coordinated water indicate stronger hydrogen bondsand stronger OH/π interactions of coordinated in comparison to noncoordianted water molecule [4,5]. The calculations on OH/Minteractions between metal ion in square-planar complexes and water molecule indicate that these interactions are among the strongesthydrogen bonds in any molecular system [6].The studies on stacking interactions of benzene molecules in the crystal structures in the CSD show preference for interactions at largehorizontal displacements, while high level quantum chemical calculations indicate significantly strong interactions at large offsets; theenergy is 70% of the strongest stacking geometry [7].",
publisher = "The International Union of Crystallography (IUCr)",
journal = "Acta Crystallographica, section A",
title = "Study of noncovalent interactions using crystal structure data in the Cambridge Structural Database",
volume = "A77",
pages = "C192",
doi = "10.1107/S0108767321094903"
}
Milovanović, M. R., Živković, J. M., Ninković, D. B., Blagojević Filipović, J. P., Vojislavljević-Vasilev, D. Z., Veljković, I. S., Stanković, I. M., Malenov, D. P., Medaković, V., Veljković, D. Ž.,& Zarić, S. D.. (2021). Study of noncovalent interactions using crystal structure data in the Cambridge Structural Database. in Acta Crystallographica, section A
The International Union of Crystallography (IUCr)., A77, C192.
https://doi.org/10.1107/S0108767321094903
Milovanović MR, Živković JM, Ninković DB, Blagojević Filipović JP, Vojislavljević-Vasilev DZ, Veljković IS, Stanković IM, Malenov DP, Medaković V, Veljković DŽ, Zarić SD. Study of noncovalent interactions using crystal structure data in the Cambridge Structural Database. in Acta Crystallographica, section A. 2021;A77:C192.
doi:10.1107/S0108767321094903 .
Milovanović, Milan R., Živković, Jelena M., Ninković, Dragan B., Blagojević Filipović, Jelena P., Vojislavljević-Vasilev, Dubravka Z., Veljković, Ivana S., Stanković, Ivana M., Malenov, Dušan P., Medaković, Vesna, Veljković, Dušan Ž., Zarić, Snežana D., "Study of noncovalent interactions using crystal structure data in the Cambridge Structural Database" in Acta Crystallographica, section A, A77 (2021):C192,
https://doi.org/10.1107/S0108767321094903 . .

Улога нековалентних интеракција у модификовању особина високоенергетских материјала

Veljković, Dušan Ž.; Kretić, Danijela S.; Malenov, Dušan P.; Veljković, Ivana S.; Ninković, Dragan B.; Zarić, Snežana D.

(Belgrade : Serbian Chemical Society, 2021)

TY  - CONF
AU  - Veljković, Dušan Ž.
AU  - Kretić, Danijela S.
AU  - Malenov, Dušan P.
AU  - Veljković, Ivana S.
AU  - Ninković, Dragan B.
AU  - Zarić, Snežana D.
PY  - 2021
UR  - https://cer.ihtm.bg.ac.rs/handle/123456789/5348
AB  - У овом раду смо испитивали утицај нековалентних интеракција на електростатичке потенцијале и осетљивост ка детонацији одабраних високоенергетских молекула. Резултати прорачуна рађених на M06/cc-PVDZ нивоу су показали да водоничне везе значајно утичу на вредности електростатичког потенцијала и осетљивост ка детонацији високоенергетских молекула. У случајевима када високоенергетски молекул игра улогу акцептора водоника, вредности електростатичког потенцијала изнад центара високоенергетских молекула се смањују за 20-25%. Ово даје могућност за коришћење водоничног везивања за модификовање осетљивости високоенергетских молекула.
AB  - In this work we studied influence of non-covalent interactions on the electrostatic potentials and  impact sensitivity of selected high energetic molecules (HEM). Study was performed using quantum  chemical calculations on model systems and crystal structures of selected HEMs. Results of M06/cc-PVDZ calculations showed that hydrogen bonding significantly affects electrostatic  potential values and impact sensitivities of HEMs. In cases in which HEM molecules act as  hydrogen atom acceptors, electrostatic potential values in the centers of HEM molecules decreases  by 20-25%. This gives opportunity for modification of impact sensitivities of HEM molecules.
PB  - Belgrade : Serbian Chemical Society
C3  - Book of abstracts / Proceedings 57th Meeting of the Serbian Chemical Society // Kratki izvodi radova / Knjiga radova 57. Savetovanje Srpskog hemijskog društva
T1  - Улога нековалентних интеракција у модификовању особина високоенергетских  материјала
T1  - Role of non-covalent interactions in modification of properties of high energetic materials
SP  - 98
EP  - 98
UR  - https://hdl.handle.net/21.15107/rcub_cer_5348
ER  - 
@conference{
author = "Veljković, Dušan Ž. and Kretić, Danijela S. and Malenov, Dušan P. and Veljković, Ivana S. and Ninković, Dragan B. and Zarić, Snežana D.",
year = "2021",
abstract = "У овом раду смо испитивали утицај нековалентних интеракција на електростатичке потенцијале и осетљивост ка детонацији одабраних високоенергетских молекула. Резултати прорачуна рађених на M06/cc-PVDZ нивоу су показали да водоничне везе значајно утичу на вредности електростатичког потенцијала и осетљивост ка детонацији високоенергетских молекула. У случајевима када високоенергетски молекул игра улогу акцептора водоника, вредности електростатичког потенцијала изнад центара високоенергетских молекула се смањују за 20-25%. Ово даје могућност за коришћење водоничног везивања за модификовање осетљивости високоенергетских молекула., In this work we studied influence of non-covalent interactions on the electrostatic potentials and  impact sensitivity of selected high energetic molecules (HEM). Study was performed using quantum  chemical calculations on model systems and crystal structures of selected HEMs. Results of M06/cc-PVDZ calculations showed that hydrogen bonding significantly affects electrostatic  potential values and impact sensitivities of HEMs. In cases in which HEM molecules act as  hydrogen atom acceptors, electrostatic potential values in the centers of HEM molecules decreases  by 20-25%. This gives opportunity for modification of impact sensitivities of HEM molecules.",
publisher = "Belgrade : Serbian Chemical Society",
journal = "Book of abstracts / Proceedings 57th Meeting of the Serbian Chemical Society // Kratki izvodi radova / Knjiga radova 57. Savetovanje Srpskog hemijskog društva",
title = "Улога нековалентних интеракција у модификовању особина високоенергетских  материјала, Role of non-covalent interactions in modification of properties of high energetic materials",
pages = "98-98",
url = "https://hdl.handle.net/21.15107/rcub_cer_5348"
}
Veljković, D. Ž., Kretić, D. S., Malenov, D. P., Veljković, I. S., Ninković, D. B.,& Zarić, S. D.. (2021). Улога нековалентних интеракција у модификовању особина високоенергетских  материјала. in Book of abstracts / Proceedings 57th Meeting of the Serbian Chemical Society // Kratki izvodi radova / Knjiga radova 57. Savetovanje Srpskog hemijskog društva
Belgrade : Serbian Chemical Society., 98-98.
https://hdl.handle.net/21.15107/rcub_cer_5348
Veljković DŽ, Kretić DS, Malenov DP, Veljković IS, Ninković DB, Zarić SD. Улога нековалентних интеракција у модификовању особина високоенергетских  материјала. in Book of abstracts / Proceedings 57th Meeting of the Serbian Chemical Society // Kratki izvodi radova / Knjiga radova 57. Savetovanje Srpskog hemijskog društva. 2021;:98-98.
https://hdl.handle.net/21.15107/rcub_cer_5348 .
Veljković, Dušan Ž., Kretić, Danijela S., Malenov, Dušan P., Veljković, Ivana S., Ninković, Dragan B., Zarić, Snežana D., "Улога нековалентних интеракција у модификовању особина високоенергетских  материјала" in Book of abstracts / Proceedings 57th Meeting of the Serbian Chemical Society // Kratki izvodi radova / Knjiga radova 57. Savetovanje Srpskog hemijskog društva (2021):98-98,
https://hdl.handle.net/21.15107/rcub_cer_5348 .

Evaluation of performance of dispersion corrected density functionals for TTF-TTF stacking interactions

Veljković, Ivana S.; Malenov, Dusan P.; Zarić, Snežana

(Society of Physical Chemists of Serbia, 2021)

TY  - CONF
AU  - Veljković, Ivana S.
AU  - Malenov, Dusan P.
AU  - Zarić, Snežana
PY  - 2021
UR  - https://cer.ihtm.bg.ac.rs/handle/123456789/7116
AB  - CCSD(T)/CBS energies for stacking interactions between two tetrathiafulvalene molecules were used as benchmark data to evaluate the performance of dispersion-corrected density functionals in calculating the interaction energies. The results showed that the best functional for TTF-TTF stacking is B2PLYP-D3 with 6-311++G** basis set, which successfully reproduces gold standard CCSD(T)/CBS interaction energies. M06L-D3 functional with 6-311++G** basis set consistently underestimates interaction energies, giving potential energy curves of accurate shapes.
PB  - Society of Physical Chemists of Serbia
C3  - 15th International Conference on Fundamental and Applied Aspects of Physical Chemistry, "Physical Chemistry 2021," Belgrade, Serbia
T1  - Evaluation of performance of dispersion corrected density functionals for TTF-TTF stacking interactions
SP  - 84
EP  - 84
UR  - https://hdl.handle.net/21.15107/rcub_cer_7116
ER  - 
@conference{
author = "Veljković, Ivana S. and Malenov, Dusan P. and Zarić, Snežana",
year = "2021",
abstract = "CCSD(T)/CBS energies for stacking interactions between two tetrathiafulvalene molecules were used as benchmark data to evaluate the performance of dispersion-corrected density functionals in calculating the interaction energies. The results showed that the best functional for TTF-TTF stacking is B2PLYP-D3 with 6-311++G** basis set, which successfully reproduces gold standard CCSD(T)/CBS interaction energies. M06L-D3 functional with 6-311++G** basis set consistently underestimates interaction energies, giving potential energy curves of accurate shapes.",
publisher = "Society of Physical Chemists of Serbia",
journal = "15th International Conference on Fundamental and Applied Aspects of Physical Chemistry, "Physical Chemistry 2021," Belgrade, Serbia",
title = "Evaluation of performance of dispersion corrected density functionals for TTF-TTF stacking interactions",
pages = "84-84",
url = "https://hdl.handle.net/21.15107/rcub_cer_7116"
}
Veljković, I. S., Malenov, D. P.,& Zarić, S.. (2021). Evaluation of performance of dispersion corrected density functionals for TTF-TTF stacking interactions. in 15th International Conference on Fundamental and Applied Aspects of Physical Chemistry, "Physical Chemistry 2021," Belgrade, Serbia
Society of Physical Chemists of Serbia., 84-84.
https://hdl.handle.net/21.15107/rcub_cer_7116
Veljković IS, Malenov DP, Zarić S. Evaluation of performance of dispersion corrected density functionals for TTF-TTF stacking interactions. in 15th International Conference on Fundamental and Applied Aspects of Physical Chemistry, "Physical Chemistry 2021," Belgrade, Serbia. 2021;:84-84.
https://hdl.handle.net/21.15107/rcub_cer_7116 .
Veljković, Ivana S., Malenov, Dusan P., Zarić, Snežana, "Evaluation of performance of dispersion corrected density functionals for TTF-TTF stacking interactions" in 15th International Conference on Fundamental and Applied Aspects of Physical Chemistry, "Physical Chemistry 2021," Belgrade, Serbia (2021):84-84,
https://hdl.handle.net/21.15107/rcub_cer_7116 .

Noncovalent interactions of metal complexes

Ninković, Dragan; Malenov, Dušan; Veljković, Dušan; Andrić, Jelena M.; Vojislavljević-Vasilev, Dubravka; Veljković, Ivana; Zarić, Snežana

(2019)

TY  - CONF
AU  - Ninković, Dragan
AU  - Malenov, Dušan
AU  - Veljković, Dušan
AU  - Andrić, Jelena M.
AU  - Vojislavljević-Vasilev, Dubravka
AU  - Veljković, Ivana
AU  - Zarić, Snežana
PY  - 2019
UR  - https://cer.ihtm.bg.ac.rs/handle/123456789/7502
AB  - We studied noncovalent interactions of metal complexes and described several new types of these interactions. Our studies are based on analyzing data in crystal structures from the Cambridge Structural Database (CSD) and on quantum chemical calculations. The analysis of the data from the CSD enable to recognize interactions in crystal structures and to describe the geometries of these interactions, while by quantum chemical calculations we can evaluate interaction energies and find the most stable interaction geometries.Our study of planar metal-chelate rings interactions, based on data in the CSD, showed possibility of chelate ring stacking interactions with organic aromatic rings, and stacking interactions between two chelate rings in crystal structures. The quantum chemical calculations indicate strong stacking interactions of metal-chelate rings; the stacking of metal- chelate rings is stronger than stacking between two benzene molecules.Studies of interactions of coordinated water and ammonia indicate stronger hydrogen bonds and stronger OH/π and NH/π interactions of coordinated in comparison to noncoordianted water and ammonia. Namely in the crystal structures the interaction distances are shorter, while the calculations show larger interactions energies.The calculations on OH/M interactions between metal ion in square-planar complexes and water molecule indicate that these interactions are among the strongest hydrogen bonds in any molecular system.
C3  - XVII International Conference on Coordination and Bioinorganic Chemistry, Progressive Trends in Coordination, Bioinorganic, and Applied Inorganic Chemistry, Smolenice, Slovakia, June 2-7, 2019
T1  - Noncovalent interactions of metal complexes
SP  - 122
EP  - 122
UR  - https://hdl.handle.net/21.15107/rcub_cer_7502
ER  - 
@conference{
author = "Ninković, Dragan and Malenov, Dušan and Veljković, Dušan and Andrić, Jelena M. and Vojislavljević-Vasilev, Dubravka and Veljković, Ivana and Zarić, Snežana",
year = "2019",
abstract = "We studied noncovalent interactions of metal complexes and described several new types of these interactions. Our studies are based on analyzing data in crystal structures from the Cambridge Structural Database (CSD) and on quantum chemical calculations. The analysis of the data from the CSD enable to recognize interactions in crystal structures and to describe the geometries of these interactions, while by quantum chemical calculations we can evaluate interaction energies and find the most stable interaction geometries.Our study of planar metal-chelate rings interactions, based on data in the CSD, showed possibility of chelate ring stacking interactions with organic aromatic rings, and stacking interactions between two chelate rings in crystal structures. The quantum chemical calculations indicate strong stacking interactions of metal-chelate rings; the stacking of metal- chelate rings is stronger than stacking between two benzene molecules.Studies of interactions of coordinated water and ammonia indicate stronger hydrogen bonds and stronger OH/π and NH/π interactions of coordinated in comparison to noncoordianted water and ammonia. Namely in the crystal structures the interaction distances are shorter, while the calculations show larger interactions energies.The calculations on OH/M interactions between metal ion in square-planar complexes and water molecule indicate that these interactions are among the strongest hydrogen bonds in any molecular system.",
journal = "XVII International Conference on Coordination and Bioinorganic Chemistry, Progressive Trends in Coordination, Bioinorganic, and Applied Inorganic Chemistry, Smolenice, Slovakia, June 2-7, 2019",
title = "Noncovalent interactions of metal complexes",
pages = "122-122",
url = "https://hdl.handle.net/21.15107/rcub_cer_7502"
}
Ninković, D., Malenov, D., Veljković, D., Andrić, J. M., Vojislavljević-Vasilev, D., Veljković, I.,& Zarić, S.. (2019). Noncovalent interactions of metal complexes. in XVII International Conference on Coordination and Bioinorganic Chemistry, Progressive Trends in Coordination, Bioinorganic, and Applied Inorganic Chemistry, Smolenice, Slovakia, June 2-7, 2019, 122-122.
https://hdl.handle.net/21.15107/rcub_cer_7502
Ninković D, Malenov D, Veljković D, Andrić JM, Vojislavljević-Vasilev D, Veljković I, Zarić S. Noncovalent interactions of metal complexes. in XVII International Conference on Coordination and Bioinorganic Chemistry, Progressive Trends in Coordination, Bioinorganic, and Applied Inorganic Chemistry, Smolenice, Slovakia, June 2-7, 2019. 2019;:122-122.
https://hdl.handle.net/21.15107/rcub_cer_7502 .
Ninković, Dragan, Malenov, Dušan, Veljković, Dušan, Andrić, Jelena M., Vojislavljević-Vasilev, Dubravka, Veljković, Ivana, Zarić, Snežana, "Noncovalent interactions of metal complexes" in XVII International Conference on Coordination and Bioinorganic Chemistry, Progressive Trends in Coordination, Bioinorganic, and Applied Inorganic Chemistry, Smolenice, Slovakia, June 2-7, 2019 (2019):122-122,
https://hdl.handle.net/21.15107/rcub_cer_7502 .

Noncovalent Interactions оf Metal Complexes аnd Aromatic Molecules

Ninković, Dragan B.; Veljković, Dušan; Malenov, Dusan P.; Milovanović, Milan R.; Stanković, Ivana; Veljković, Ivana S.; Medaković, Vesna B.; Blagojević Filipović, Jelena; Vojislavljević-Vasilev, Dubravka Z.; Zarić, Snežana

(Serbian Crystallographic Society, 2019)

TY  - CONF
AU  - Ninković, Dragan B.
AU  - Veljković, Dušan
AU  - Malenov, Dusan P.
AU  - Milovanović, Milan R.
AU  - Stanković, Ivana
AU  - Veljković, Ivana S.
AU  - Medaković, Vesna B.
AU  - Blagojević Filipović, Jelena
AU  - Vojislavljević-Vasilev, Dubravka Z.
AU  - Zarić, Snežana
PY  - 2019
UR  - https://cer.ihtm.bg.ac.rs/handle/123456789/6620
AB  - Our research is based on analyzing data in crystal structures from the Cambridge Structural Database (CSD) and on quantum chemical calculations. The analysis of the data from the CSD enable to recognize interactions in crystal structures and to describe the geometries of these interactions, while by quantum chemical calculations we can evaluate interaction energies and find the most stable interaction geometries. Using this methodology we were able to recognize and describe several new types of noncovalent interactions. Our study of planar metal-chelate rings interactions showed possibility of chelate ring stacking interactions with organic aromatic rings, and stacking interactions between two chelate rings. The calculated energies indicate strong stacking interactions of metal-chelate rings; the stacking of metal-chelate rings is stronger than stacking between two benzene molecules. Studies of interactions of coordinated water and ammonia indicate stronger hydrogen bonds and stronger OH/pi and NH/pi interactions of coordinated in comparison to noncoordianted water and ammonia. The calculations on OH/M interac-tions between metal ion in square-planar complexes and water molecule indicate that these interactions are among the strongest hydrogen bonds in any molecular system. The studies on aromatic molecules indicate stacking interactions at large horizontal dispacements between two aromatic molecules with significantly strong interacitons, the energy is 70% of the strongest stacking geometry. Our data also indicate that stacking interactions of an aliphatic rings with an aromatic ring are stonger than interactions between two aromatic molecules, while aliphatic/aromatic interactions are very frequent in protein structures.
PB  - Serbian Crystallographic Society
C3  - 26th Conference of the Serbian Crystallographic Society, Abstracts, Silver Lake, Serbia / XXVI Konferencija Srpskog kristalografskog društva, Izvodi radova, Srebrno jezero, Srbija
T1  - Noncovalent Interactions оf Metal Complexes аnd Aromatic Molecules
SP  - 9
EP  - 9
UR  - https://hdl.handle.net/21.15107/rcub_cer_6620
ER  - 
@conference{
author = "Ninković, Dragan B. and Veljković, Dušan and Malenov, Dusan P. and Milovanović, Milan R. and Stanković, Ivana and Veljković, Ivana S. and Medaković, Vesna B. and Blagojević Filipović, Jelena and Vojislavljević-Vasilev, Dubravka Z. and Zarić, Snežana",
year = "2019",
abstract = "Our research is based on analyzing data in crystal structures from the Cambridge Structural Database (CSD) and on quantum chemical calculations. The analysis of the data from the CSD enable to recognize interactions in crystal structures and to describe the geometries of these interactions, while by quantum chemical calculations we can evaluate interaction energies and find the most stable interaction geometries. Using this methodology we were able to recognize and describe several new types of noncovalent interactions. Our study of planar metal-chelate rings interactions showed possibility of chelate ring stacking interactions with organic aromatic rings, and stacking interactions between two chelate rings. The calculated energies indicate strong stacking interactions of metal-chelate rings; the stacking of metal-chelate rings is stronger than stacking between two benzene molecules. Studies of interactions of coordinated water and ammonia indicate stronger hydrogen bonds and stronger OH/pi and NH/pi interactions of coordinated in comparison to noncoordianted water and ammonia. The calculations on OH/M interac-tions between metal ion in square-planar complexes and water molecule indicate that these interactions are among the strongest hydrogen bonds in any molecular system. The studies on aromatic molecules indicate stacking interactions at large horizontal dispacements between two aromatic molecules with significantly strong interacitons, the energy is 70% of the strongest stacking geometry. Our data also indicate that stacking interactions of an aliphatic rings with an aromatic ring are stonger than interactions between two aromatic molecules, while aliphatic/aromatic interactions are very frequent in protein structures.",
publisher = "Serbian Crystallographic Society",
journal = "26th Conference of the Serbian Crystallographic Society, Abstracts, Silver Lake, Serbia / XXVI Konferencija Srpskog kristalografskog društva, Izvodi radova, Srebrno jezero, Srbija",
title = "Noncovalent Interactions оf Metal Complexes аnd Aromatic Molecules",
pages = "9-9",
url = "https://hdl.handle.net/21.15107/rcub_cer_6620"
}
Ninković, D. B., Veljković, D., Malenov, D. P., Milovanović, M. R., Stanković, I., Veljković, I. S., Medaković, V. B., Blagojević Filipović, J., Vojislavljević-Vasilev, D. Z.,& Zarić, S.. (2019). Noncovalent Interactions оf Metal Complexes аnd Aromatic Molecules. in 26th Conference of the Serbian Crystallographic Society, Abstracts, Silver Lake, Serbia / XXVI Konferencija Srpskog kristalografskog društva, Izvodi radova, Srebrno jezero, Srbija
Serbian Crystallographic Society., 9-9.
https://hdl.handle.net/21.15107/rcub_cer_6620
Ninković DB, Veljković D, Malenov DP, Milovanović MR, Stanković I, Veljković IS, Medaković VB, Blagojević Filipović J, Vojislavljević-Vasilev DZ, Zarić S. Noncovalent Interactions оf Metal Complexes аnd Aromatic Molecules. in 26th Conference of the Serbian Crystallographic Society, Abstracts, Silver Lake, Serbia / XXVI Konferencija Srpskog kristalografskog društva, Izvodi radova, Srebrno jezero, Srbija. 2019;:9-9.
https://hdl.handle.net/21.15107/rcub_cer_6620 .
Ninković, Dragan B., Veljković, Dušan, Malenov, Dusan P., Milovanović, Milan R., Stanković, Ivana, Veljković, Ivana S., Medaković, Vesna B., Blagojević Filipović, Jelena, Vojislavljević-Vasilev, Dubravka Z., Zarić, Snežana, "Noncovalent Interactions оf Metal Complexes аnd Aromatic Molecules" in 26th Conference of the Serbian Crystallographic Society, Abstracts, Silver Lake, Serbia / XXVI Konferencija Srpskog kristalografskog društva, Izvodi radova, Srebrno jezero, Srbija (2019):9-9,
https://hdl.handle.net/21.15107/rcub_cer_6620 .

Study of stacking interactions between two neutral tetrathiafulvalene molecules in Cambridge Structural Database crystal structures and by quantum chemical calculations

Antonijević, Ivana; Malenov, Dušan P.; Hall, Michael B.; Zarić, Snežana D.

(Wiley, 2019)

TY  - JOUR
AU  - Antonijević, Ivana
AU  - Malenov, Dušan P.
AU  - Hall, Michael B.
AU  - Zarić, Snežana D.
PY  - 2019
UR  - https://cer.ihtm.bg.ac.rs/handle/123456789/2962
AB  - Tetrathiafulvalene (TTF) and its derivatives are very well known as electron donors with widespread use in the field of organic conductors and superconductors. Stacking interactions between two neutral TTF fragments were studied by analysing data from Cambridge Structural Database crystal structures and by quantum chemical calculations. Analysis of the contacts found in crystal structures shows high occurrence of parallel displaced orientations of TTF molecules. In the majority of the contacts, two TTF molecules are displaced along their longer C 2 axis. The most frequent geometry has the strongest TTF–TTF stacking interaction, with CCSD(T)/CBS energy of −9.96 kcal mol −1 . All the other frequent geometries in crystal structures are similar to geometries of the minima on the calculated potential energy surface.
PB  - Wiley
T2  - Acta Crystallographica Section B: Structural Science, Crystal Engineering and Materials
T1  - Study of stacking interactions between two neutral tetrathiafulvalene molecules in Cambridge Structural Database crystal structures and by quantum chemical calculations
VL  - 75
IS  - 1
SP  - 1
EP  - 7
DO  - 10.1107/S2052520618015494
ER  - 
@article{
author = "Antonijević, Ivana and Malenov, Dušan P. and Hall, Michael B. and Zarić, Snežana D.",
year = "2019",
abstract = "Tetrathiafulvalene (TTF) and its derivatives are very well known as electron donors with widespread use in the field of organic conductors and superconductors. Stacking interactions between two neutral TTF fragments were studied by analysing data from Cambridge Structural Database crystal structures and by quantum chemical calculations. Analysis of the contacts found in crystal structures shows high occurrence of parallel displaced orientations of TTF molecules. In the majority of the contacts, two TTF molecules are displaced along their longer C 2 axis. The most frequent geometry has the strongest TTF–TTF stacking interaction, with CCSD(T)/CBS energy of −9.96 kcal mol −1 . All the other frequent geometries in crystal structures are similar to geometries of the minima on the calculated potential energy surface.",
publisher = "Wiley",
journal = "Acta Crystallographica Section B: Structural Science, Crystal Engineering and Materials",
title = "Study of stacking interactions between two neutral tetrathiafulvalene molecules in Cambridge Structural Database crystal structures and by quantum chemical calculations",
volume = "75",
number = "1",
pages = "1-7",
doi = "10.1107/S2052520618015494"
}
Antonijević, I., Malenov, D. P., Hall, M. B.,& Zarić, S. D.. (2019). Study of stacking interactions between two neutral tetrathiafulvalene molecules in Cambridge Structural Database crystal structures and by quantum chemical calculations. in Acta Crystallographica Section B: Structural Science, Crystal Engineering and Materials
Wiley., 75(1), 1-7.
https://doi.org/10.1107/S2052520618015494
Antonijević I, Malenov DP, Hall MB, Zarić SD. Study of stacking interactions between two neutral tetrathiafulvalene molecules in Cambridge Structural Database crystal structures and by quantum chemical calculations. in Acta Crystallographica Section B: Structural Science, Crystal Engineering and Materials. 2019;75(1):1-7.
doi:10.1107/S2052520618015494 .
Antonijević, Ivana, Malenov, Dušan P., Hall, Michael B., Zarić, Snežana D., "Study of stacking interactions between two neutral tetrathiafulvalene molecules in Cambridge Structural Database crystal structures and by quantum chemical calculations" in Acta Crystallographica Section B: Structural Science, Crystal Engineering and Materials, 75, no. 1 (2019):1-7,
https://doi.org/10.1107/S2052520618015494 . .
9
8
11

Corrigendum to “Noncovalent bonding: Stacking interactions of chelate rings of transition metal complexes” [Coord. Chem. Rev. 345 (2017) 318–341]

Malenov, Dušan P.; Janjić, Goran; Medaković, Vesna; Hall, Michael B.; Zarić, Snežana D.

(Elsevier Science Sa, Lausanne, 2018)

TY  - JOUR
AU  - Malenov, Dušan P.
AU  - Janjić, Goran
AU  - Medaković, Vesna
AU  - Hall, Michael B.
AU  - Zarić, Snežana D.
PY  - 2018
UR  - https://cer.ihtm.bg.ac.rs/handle/123456789/2402
PB  - Elsevier Science Sa, Lausanne
T2  - Coordination Chemistry Reviews
T1  - Corrigendum to “Noncovalent bonding: Stacking interactions of chelate rings of transition metal complexes” [Coord. Chem. Rev. 345 (2017) 318–341]
VL  - 376
SP  - 590
EP  - 590
DO  - 10.1016/j.ccr.2018.06.009
ER  - 
@article{
author = "Malenov, Dušan P. and Janjić, Goran and Medaković, Vesna and Hall, Michael B. and Zarić, Snežana D.",
year = "2018",
publisher = "Elsevier Science Sa, Lausanne",
journal = "Coordination Chemistry Reviews",
title = "Corrigendum to “Noncovalent bonding: Stacking interactions of chelate rings of transition metal complexes” [Coord. Chem. Rev. 345 (2017) 318–341]",
volume = "376",
pages = "590-590",
doi = "10.1016/j.ccr.2018.06.009"
}
Malenov, D. P., Janjić, G., Medaković, V., Hall, M. B.,& Zarić, S. D.. (2018). Corrigendum to “Noncovalent bonding: Stacking interactions of chelate rings of transition metal complexes” [Coord. Chem. Rev. 345 (2017) 318–341]. in Coordination Chemistry Reviews
Elsevier Science Sa, Lausanne., 376, 590-590.
https://doi.org/10.1016/j.ccr.2018.06.009
Malenov DP, Janjić G, Medaković V, Hall MB, Zarić SD. Corrigendum to “Noncovalent bonding: Stacking interactions of chelate rings of transition metal complexes” [Coord. Chem. Rev. 345 (2017) 318–341]. in Coordination Chemistry Reviews. 2018;376:590-590.
doi:10.1016/j.ccr.2018.06.009 .
Malenov, Dušan P., Janjić, Goran, Medaković, Vesna, Hall, Michael B., Zarić, Snežana D., "Corrigendum to “Noncovalent bonding: Stacking interactions of chelate rings of transition metal complexes” [Coord. Chem. Rev. 345 (2017) 318–341]" in Coordination Chemistry Reviews, 376 (2018):590-590,
https://doi.org/10.1016/j.ccr.2018.06.009 . .
1
8

Stacking of cyclopentadienyl organometallic sandwich and half-sandwich compounds. Strong interactions of sandwiches at large offsets

Malenov, Dušan P.; Antonijević, Ivana; Hall, Michael B.; Zarić, Snežana D.

(Royal Soc Chemistry, Cambridge, 2018)

TY  - JOUR
AU  - Malenov, Dušan P.
AU  - Antonijević, Ivana
AU  - Hall, Michael B.
AU  - Zarić, Snežana D.
PY  - 2018
UR  - https://cer.ihtm.bg.ac.rs/handle/123456789/2423
AB  - Stacking interactions of organometallic sandwich and half-sandwich compounds with cyclopentadienyl (Cp) were studied by searching and observing the crystal structures in the Cambridge Structural Database and performing density functional calculations. The strongest calculated interactions are at an offset of 1.5 angstrom with energies for sandwich and half-sandwich dimers of -3.37 and -2.87 kcal mol(-1), respectively, somewhat stronger than the stacking interaction between two benzene molecules, -2.73 kcal mol(-1). At large offsets of 5.0 angstrom, 74% of the strongest energy is preserved for the sandwich dimer and only 29% for the half-sandwich dimer. In crystal structures, for sandwich compounds, the stacking at large offsets is dominant (73%), since the interaction at large offsets is relatively strong, and the geometries enable additional simultaneous interactions with Cp faces. The stacking at large offsets between half-sandwich compounds is less dominant, since the interaction is weaker. However, Cp half-sandwich compounds stack at large offsets unexpectedly often (almost 60%), since the branching of their other ligands in the compound favors more simultaneous interactions with Cp faces. Strong interaction at large offsets for sandwich compounds is the consequence of favorable electrostatic interaction, which is not the feature of stacking between half-sandwich compounds.
PB  - Royal Soc Chemistry, Cambridge
T2  - Crystengcomm
T1  - Stacking of cyclopentadienyl organometallic sandwich and half-sandwich compounds. Strong interactions of sandwiches at large offsets
VL  - 20
IS  - 31
SP  - 4506
EP  - 4514
DO  - 10.1039/c8ce00597d
ER  - 
@article{
author = "Malenov, Dušan P. and Antonijević, Ivana and Hall, Michael B. and Zarić, Snežana D.",
year = "2018",
abstract = "Stacking interactions of organometallic sandwich and half-sandwich compounds with cyclopentadienyl (Cp) were studied by searching and observing the crystal structures in the Cambridge Structural Database and performing density functional calculations. The strongest calculated interactions are at an offset of 1.5 angstrom with energies for sandwich and half-sandwich dimers of -3.37 and -2.87 kcal mol(-1), respectively, somewhat stronger than the stacking interaction between two benzene molecules, -2.73 kcal mol(-1). At large offsets of 5.0 angstrom, 74% of the strongest energy is preserved for the sandwich dimer and only 29% for the half-sandwich dimer. In crystal structures, for sandwich compounds, the stacking at large offsets is dominant (73%), since the interaction at large offsets is relatively strong, and the geometries enable additional simultaneous interactions with Cp faces. The stacking at large offsets between half-sandwich compounds is less dominant, since the interaction is weaker. However, Cp half-sandwich compounds stack at large offsets unexpectedly often (almost 60%), since the branching of their other ligands in the compound favors more simultaneous interactions with Cp faces. Strong interaction at large offsets for sandwich compounds is the consequence of favorable electrostatic interaction, which is not the feature of stacking between half-sandwich compounds.",
publisher = "Royal Soc Chemistry, Cambridge",
journal = "Crystengcomm",
title = "Stacking of cyclopentadienyl organometallic sandwich and half-sandwich compounds. Strong interactions of sandwiches at large offsets",
volume = "20",
number = "31",
pages = "4506-4514",
doi = "10.1039/c8ce00597d"
}
Malenov, D. P., Antonijević, I., Hall, M. B.,& Zarić, S. D.. (2018). Stacking of cyclopentadienyl organometallic sandwich and half-sandwich compounds. Strong interactions of sandwiches at large offsets. in Crystengcomm
Royal Soc Chemistry, Cambridge., 20(31), 4506-4514.
https://doi.org/10.1039/c8ce00597d
Malenov DP, Antonijević I, Hall MB, Zarić SD. Stacking of cyclopentadienyl organometallic sandwich and half-sandwich compounds. Strong interactions of sandwiches at large offsets. in Crystengcomm. 2018;20(31):4506-4514.
doi:10.1039/c8ce00597d .
Malenov, Dušan P., Antonijević, Ivana, Hall, Michael B., Zarić, Snežana D., "Stacking of cyclopentadienyl organometallic sandwich and half-sandwich compounds. Strong interactions of sandwiches at large offsets" in Crystengcomm, 20, no. 31 (2018):4506-4514,
https://doi.org/10.1039/c8ce00597d . .
11
9
11

Strong stacking interactions between tetrathiafulvalene fragments: crystallographic and quantum chemical study

Antonijević, Ivana; Malenov, Dusan P.; Zarić, Snežana

(Serbian Crystallographic Society, 2018)

TY  - CONF
AU  - Antonijević, Ivana
AU  - Malenov, Dusan P.
AU  - Zarić, Snežana
PY  - 2018
UR  - https://cer.ihtm.bg.ac.rs/handle/123456789/6606
AB  - In this work, pi-pi stacking interactions beween two neutral TTF fragments were investigated by searching the Cambrige Structural Database (CSD).
PB  - Serbian Crystallographic Society
C3  - XXV Conference of the Serbian Crystallographic Society, Abstracts, Bajina Bašta / XXV Konferencija Srpskog kristalografskog društva, Izvodi radova, Bajina Bašta
T1  - Strong stacking interactions between tetrathiafulvalene fragments: crystallographic and quantum chemical study
SP  - 77
EP  - 77
UR  - https://hdl.handle.net/21.15107/rcub_cer_6606
ER  - 
@conference{
author = "Antonijević, Ivana and Malenov, Dusan P. and Zarić, Snežana",
year = "2018",
abstract = "In this work, pi-pi stacking interactions beween two neutral TTF fragments were investigated by searching the Cambrige Structural Database (CSD).",
publisher = "Serbian Crystallographic Society",
journal = "XXV Conference of the Serbian Crystallographic Society, Abstracts, Bajina Bašta / XXV Konferencija Srpskog kristalografskog društva, Izvodi radova, Bajina Bašta",
title = "Strong stacking interactions between tetrathiafulvalene fragments: crystallographic and quantum chemical study",
pages = "77-77",
url = "https://hdl.handle.net/21.15107/rcub_cer_6606"
}
Antonijević, I., Malenov, D. P.,& Zarić, S.. (2018). Strong stacking interactions between tetrathiafulvalene fragments: crystallographic and quantum chemical study. in XXV Conference of the Serbian Crystallographic Society, Abstracts, Bajina Bašta / XXV Konferencija Srpskog kristalografskog društva, Izvodi radova, Bajina Bašta
Serbian Crystallographic Society., 77-77.
https://hdl.handle.net/21.15107/rcub_cer_6606
Antonijević I, Malenov DP, Zarić S. Strong stacking interactions between tetrathiafulvalene fragments: crystallographic and quantum chemical study. in XXV Conference of the Serbian Crystallographic Society, Abstracts, Bajina Bašta / XXV Konferencija Srpskog kristalografskog društva, Izvodi radova, Bajina Bašta. 2018;:77-77.
https://hdl.handle.net/21.15107/rcub_cer_6606 .
Antonijević, Ivana, Malenov, Dusan P., Zarić, Snežana, "Strong stacking interactions between tetrathiafulvalene fragments: crystallographic and quantum chemical study" in XXV Conference of the Serbian Crystallographic Society, Abstracts, Bajina Bašta / XXV Konferencija Srpskog kristalografskog društva, Izvodi radova, Bajina Bašta (2018):77-77,
https://hdl.handle.net/21.15107/rcub_cer_6606 .

Large horizontal displacements of benzene-benzene stacking interactions in co-crystals

Malenov, Dušan P.; Antonijević, Ivana; Zarić, Snežana D.

(Walter de Gruyter GmbH, 2017)

TY  - CHAP
AU  - Malenov, Dušan P.
AU  - Antonijević, Ivana
AU  - Zarić, Snežana D.
PY  - 2017
UR  - https://cer.ihtm.bg.ac.rs/handle/123456789/2218
PB  - Walter de Gruyter GmbH
T2  - Multi-Component Crystals: Synthesis, Concepts, Function
T1  - Large horizontal displacements of benzene-benzene stacking interactions in co-crystals
SP  - 255
EP  - 271
DO  - 10.1515/9783110464955-011
ER  - 
@inbook{
author = "Malenov, Dušan P. and Antonijević, Ivana and Zarić, Snežana D.",
year = "2017",
publisher = "Walter de Gruyter GmbH",
journal = "Multi-Component Crystals: Synthesis, Concepts, Function",
booktitle = "Large horizontal displacements of benzene-benzene stacking interactions in co-crystals",
pages = "255-271",
doi = "10.1515/9783110464955-011"
}
Malenov, D. P., Antonijević, I.,& Zarić, S. D.. (2017). Large horizontal displacements of benzene-benzene stacking interactions in co-crystals. in Multi-Component Crystals: Synthesis, Concepts, Function
Walter de Gruyter GmbH., 255-271.
https://doi.org/10.1515/9783110464955-011
Malenov DP, Antonijević I, Zarić SD. Large horizontal displacements of benzene-benzene stacking interactions in co-crystals. in Multi-Component Crystals: Synthesis, Concepts, Function. 2017;:255-271.
doi:10.1515/9783110464955-011 .
Malenov, Dušan P., Antonijević, Ivana, Zarić, Snežana D., "Large horizontal displacements of benzene-benzene stacking interactions in co-crystals" in Multi-Component Crystals: Synthesis, Concepts, Function (2017):255-271,
https://doi.org/10.1515/9783110464955-011 . .
2
4

Noncovalent bonding: Stacking interactions of chelate rings of transition metal complexes

Malenov, Dušan P.; Janjić, Goran; Medaković, Vesna; Hall, Michael B.; Zarić, Snežana D.

(Elsevier Science Sa, Lausanne, 2017)

TY  - JOUR
AU  - Malenov, Dušan P.
AU  - Janjić, Goran
AU  - Medaković, Vesna
AU  - Hall, Michael B.
AU  - Zarić, Snežana D.
PY  - 2017
UR  - https://cer.ihtm.bg.ac.rs/handle/123456789/2234
AB  - Analysis of crystal structure data deposited in the Cambridge Structural Database (CSD) has shown that aromatic rings tend to stack with square planar transition metal complexes when they contain chelate rings. In these interactions, the orientation between chelate and aryl ring is a parallel-displaced orientation, like stacking interactions between aromatic molecules. In fused systems containing chelate and aryl rings, the aryl rings prefer to stack with the chelate rather than with other aryl rings. Quantum chemical calculations show that chelate-aryl stacking is stronger than aryl-aryl stacking. Interaction energies of six-membered chelates of the acetylacetonato type with benzene exceed -6 kcal/mol (CCSD(T)/CBS), more that twice as strong as that for two benzene molecules. Further analysis of the CSD has shown that chelate rings, both isolated and fused stack with other chelate rings. These chelate-chelate stacking interactions can have both face-to-face and parallel-displaced geometries, unlike the stacking interactions between aromatic molecules, for which face-to-face geometry is not typical. Chelate-chelate stacking is stronger than aryl-aryl stacking and stronger even than chelate-aryl stacking. Stacking energies between six-membered chelates of acetylacetonato type exceed -9 kcal/mol, while those between five-membered dithiolene chelates are even stronger. Calculated interaction energies and analysis of supramolecular structures have shown that chelate-chelate and chelate-aryl stacking must be considered in understanding the packing and organization of supramolecular systems and crystal engineering.
PB  - Elsevier Science Sa, Lausanne
T2  - Coordination Chemistry Reviews
T1  - Noncovalent bonding: Stacking interactions of chelate rings of transition metal complexes
VL  - 345
SP  - 318
EP  - 341
DO  - 10.1016/j.ccr.2016.12.020
ER  - 
@article{
author = "Malenov, Dušan P. and Janjić, Goran and Medaković, Vesna and Hall, Michael B. and Zarić, Snežana D.",
year = "2017",
abstract = "Analysis of crystal structure data deposited in the Cambridge Structural Database (CSD) has shown that aromatic rings tend to stack with square planar transition metal complexes when they contain chelate rings. In these interactions, the orientation between chelate and aryl ring is a parallel-displaced orientation, like stacking interactions between aromatic molecules. In fused systems containing chelate and aryl rings, the aryl rings prefer to stack with the chelate rather than with other aryl rings. Quantum chemical calculations show that chelate-aryl stacking is stronger than aryl-aryl stacking. Interaction energies of six-membered chelates of the acetylacetonato type with benzene exceed -6 kcal/mol (CCSD(T)/CBS), more that twice as strong as that for two benzene molecules. Further analysis of the CSD has shown that chelate rings, both isolated and fused stack with other chelate rings. These chelate-chelate stacking interactions can have both face-to-face and parallel-displaced geometries, unlike the stacking interactions between aromatic molecules, for which face-to-face geometry is not typical. Chelate-chelate stacking is stronger than aryl-aryl stacking and stronger even than chelate-aryl stacking. Stacking energies between six-membered chelates of acetylacetonato type exceed -9 kcal/mol, while those between five-membered dithiolene chelates are even stronger. Calculated interaction energies and analysis of supramolecular structures have shown that chelate-chelate and chelate-aryl stacking must be considered in understanding the packing and organization of supramolecular systems and crystal engineering.",
publisher = "Elsevier Science Sa, Lausanne",
journal = "Coordination Chemistry Reviews",
title = "Noncovalent bonding: Stacking interactions of chelate rings of transition metal complexes",
volume = "345",
pages = "318-341",
doi = "10.1016/j.ccr.2016.12.020"
}
Malenov, D. P., Janjić, G., Medaković, V., Hall, M. B.,& Zarić, S. D.. (2017). Noncovalent bonding: Stacking interactions of chelate rings of transition metal complexes. in Coordination Chemistry Reviews
Elsevier Science Sa, Lausanne., 345, 318-341.
https://doi.org/10.1016/j.ccr.2016.12.020
Malenov DP, Janjić G, Medaković V, Hall MB, Zarić SD. Noncovalent bonding: Stacking interactions of chelate rings of transition metal complexes. in Coordination Chemistry Reviews. 2017;345:318-341.
doi:10.1016/j.ccr.2016.12.020 .
Malenov, Dušan P., Janjić, Goran, Medaković, Vesna, Hall, Michael B., Zarić, Snežana D., "Noncovalent bonding: Stacking interactions of chelate rings of transition metal complexes" in Coordination Chemistry Reviews, 345 (2017):318-341,
https://doi.org/10.1016/j.ccr.2016.12.020 . .
1
86
72
82

Coordinating Benzenes Stack Stronger than Noncoordinating Benzenes, even at Large Horizontal Displacements

Malenov, Dušan P.; Dragelj, Jovan Lj; Janjić, Goran; Zarić, Snežana D.

(American Chemical Society (ACS), 2016)

TY  - JOUR
AU  - Malenov, Dušan P.
AU  - Dragelj, Jovan Lj
AU  - Janjić, Goran
AU  - Zarić, Snežana D.
PY  - 2016
UR  - https://cer.ihtm.bg.ac.rs/handle/123456789/1877
AB  - Stacking interactions between two benzene molecules that coordinate transition metal ions within organometallic sandwich and half-sandwich compounds were investigated by performing Cambridge Structural Database (CSD) search and DFT-D calculations. Calculations of interaction energies revealed that stacking interactions between coordinating benzenes of sandwich (-3.69 kcal/mol) and half-sandwich compounds (-3.29 kcal/mol) are significantly stronger than the stacking interaction between noncoordinating benzenes (-2.7 kcal/mol). At large horizontal displacements (offset r = 5.0 angstrom), these sandwich parallel to sandwich interactions are remarkably strong (-3.03 kcal/mol)) while half-sandwich parallel to half-sandwich interactions are significantly weaker (-1.27 kcal/mol). The results of calculations are in good agreement with the data in the crystal structures from the CSD, where 76% of sandwich parallel to sandwich contacts have large horizontal displacements, which is significantly more than 46% of half-sandwich parallel to half-sandwich contacts arranged in this fashion. The study provides valuable information about interactions of aromatic molecules relevant to crystal engineering, materials design, and molecular recognition.
PB  - American Chemical Society (ACS)
T2  - Crystal Growth & Design
T1  - Coordinating Benzenes Stack Stronger than Noncoordinating Benzenes, even at Large Horizontal Displacements
VL  - 16
IS  - 8
SP  - 4169
EP  - 4172
DO  - 10.1021/acs.cgd.5b01514
ER  - 
@article{
author = "Malenov, Dušan P. and Dragelj, Jovan Lj and Janjić, Goran and Zarić, Snežana D.",
year = "2016",
abstract = "Stacking interactions between two benzene molecules that coordinate transition metal ions within organometallic sandwich and half-sandwich compounds were investigated by performing Cambridge Structural Database (CSD) search and DFT-D calculations. Calculations of interaction energies revealed that stacking interactions between coordinating benzenes of sandwich (-3.69 kcal/mol) and half-sandwich compounds (-3.29 kcal/mol) are significantly stronger than the stacking interaction between noncoordinating benzenes (-2.7 kcal/mol). At large horizontal displacements (offset r = 5.0 angstrom), these sandwich parallel to sandwich interactions are remarkably strong (-3.03 kcal/mol)) while half-sandwich parallel to half-sandwich interactions are significantly weaker (-1.27 kcal/mol). The results of calculations are in good agreement with the data in the crystal structures from the CSD, where 76% of sandwich parallel to sandwich contacts have large horizontal displacements, which is significantly more than 46% of half-sandwich parallel to half-sandwich contacts arranged in this fashion. The study provides valuable information about interactions of aromatic molecules relevant to crystal engineering, materials design, and molecular recognition.",
publisher = "American Chemical Society (ACS)",
journal = "Crystal Growth & Design",
title = "Coordinating Benzenes Stack Stronger than Noncoordinating Benzenes, even at Large Horizontal Displacements",
volume = "16",
number = "8",
pages = "4169-4172",
doi = "10.1021/acs.cgd.5b01514"
}
Malenov, D. P., Dragelj, J. L., Janjić, G.,& Zarić, S. D.. (2016). Coordinating Benzenes Stack Stronger than Noncoordinating Benzenes, even at Large Horizontal Displacements. in Crystal Growth & Design
American Chemical Society (ACS)., 16(8), 4169-4172.
https://doi.org/10.1021/acs.cgd.5b01514
Malenov DP, Dragelj JL, Janjić G, Zarić SD. Coordinating Benzenes Stack Stronger than Noncoordinating Benzenes, even at Large Horizontal Displacements. in Crystal Growth & Design. 2016;16(8):4169-4172.
doi:10.1021/acs.cgd.5b01514 .
Malenov, Dušan P., Dragelj, Jovan Lj, Janjić, Goran, Zarić, Snežana D., "Coordinating Benzenes Stack Stronger than Noncoordinating Benzenes, even at Large Horizontal Displacements" in Crystal Growth & Design, 16, no. 8 (2016):4169-4172,
https://doi.org/10.1021/acs.cgd.5b01514 . .
21
21
22

Crystallographic and quantum-chemical analysis of parallel interaction in tetrathiafulvalene dimer

Antonijević, Ivana; Malenov, Dusan P.; Zarić, Snežana

(Serbian Crystallographic Society, 2015)

TY  - CONF
AU  - Antonijević, Ivana
AU  - Malenov, Dusan P.
AU  - Zarić, Snežana
PY  - 2015
UR  - https://cer.ihtm.bg.ac.rs/handle/123456789/6619
AB  - In this work, interactions between two parallel unsubstituted TTF molecules were investigated using statistical analysis of data obtained by searching the Cambridge Structural DataBase (CSD) and DFT-D3 calculations. Results of analysis of contacts found in the CSD show that TTF molecules in crystal structures tend towards the formation of parallel interactions. In most of the contacts molecules have slipped geometry along the long C2 axis of the one molecule with the offset value of 1.5 to 2.0 A. In order to estimate interaction energies between two neutral molecules, as well as optimal values of offsets and normal distances at which they occur, we performed quantum chemical calculations at B2PLYP-D3/6-311-H-G** and M06L-D3/6-311.G** levels of theory. The calculations are in good agreement with crystallographic data. The most stable interaction corresponds to the most frequent geometry which is found by searching CSD and has the energy value of -9.27 kcal/mol.
PB  - Serbian Crystallographic Society
C3  - XXII Conference of the Serbian Crystallographic Society, Abstracts, Smederevo, Serbia / XXII Konferencija Srpskog kristalografskog društva, Izvodi radova, Smederevo, Srbija
T1  - Crystallographic and quantum-chemical analysis of parallel interaction in tetrathiafulvalene dimer
SP  - 61
EP  - 61
UR  - https://hdl.handle.net/21.15107/rcub_cer_6619
ER  - 
@conference{
author = "Antonijević, Ivana and Malenov, Dusan P. and Zarić, Snežana",
year = "2015",
abstract = "In this work, interactions between two parallel unsubstituted TTF molecules were investigated using statistical analysis of data obtained by searching the Cambridge Structural DataBase (CSD) and DFT-D3 calculations. Results of analysis of contacts found in the CSD show that TTF molecules in crystal structures tend towards the formation of parallel interactions. In most of the contacts molecules have slipped geometry along the long C2 axis of the one molecule with the offset value of 1.5 to 2.0 A. In order to estimate interaction energies between two neutral molecules, as well as optimal values of offsets and normal distances at which they occur, we performed quantum chemical calculations at B2PLYP-D3/6-311-H-G** and M06L-D3/6-311.G** levels of theory. The calculations are in good agreement with crystallographic data. The most stable interaction corresponds to the most frequent geometry which is found by searching CSD and has the energy value of -9.27 kcal/mol.",
publisher = "Serbian Crystallographic Society",
journal = "XXII Conference of the Serbian Crystallographic Society, Abstracts, Smederevo, Serbia / XXII Konferencija Srpskog kristalografskog društva, Izvodi radova, Smederevo, Srbija",
title = "Crystallographic and quantum-chemical analysis of parallel interaction in tetrathiafulvalene dimer",
pages = "61-61",
url = "https://hdl.handle.net/21.15107/rcub_cer_6619"
}
Antonijević, I., Malenov, D. P.,& Zarić, S.. (2015). Crystallographic and quantum-chemical analysis of parallel interaction in tetrathiafulvalene dimer. in XXII Conference of the Serbian Crystallographic Society, Abstracts, Smederevo, Serbia / XXII Konferencija Srpskog kristalografskog društva, Izvodi radova, Smederevo, Srbija
Serbian Crystallographic Society., 61-61.
https://hdl.handle.net/21.15107/rcub_cer_6619
Antonijević I, Malenov DP, Zarić S. Crystallographic and quantum-chemical analysis of parallel interaction in tetrathiafulvalene dimer. in XXII Conference of the Serbian Crystallographic Society, Abstracts, Smederevo, Serbia / XXII Konferencija Srpskog kristalografskog društva, Izvodi radova, Smederevo, Srbija. 2015;:61-61.
https://hdl.handle.net/21.15107/rcub_cer_6619 .
Antonijević, Ivana, Malenov, Dusan P., Zarić, Snežana, "Crystallographic and quantum-chemical analysis of parallel interaction in tetrathiafulvalene dimer" in XXII Conference of the Serbian Crystallographic Society, Abstracts, Smederevo, Serbia / XXII Konferencija Srpskog kristalografskog društva, Izvodi radova, Smederevo, Srbija (2015):61-61,
https://hdl.handle.net/21.15107/rcub_cer_6619 .

Mutual influence of parallel, CH/O, OH/pi and lone pair/pi interactions in water/benzene/water system

Malenov, Dušan P.; Janjić, Goran; Veljković, Dušan; Zarić, Snežana D.

(Elsevier, 2013)

TY  - JOUR
AU  - Malenov, Dušan P.
AU  - Janjić, Goran
AU  - Veljković, Dušan
AU  - Zarić, Snežana D.
PY  - 2013
UR  - https://cer.ihtm.bg.ac.rs/handle/123456789/1218
AB  - The mutual influence of OH/pi, CH/O, parallel alignment (all attractive) and lone pair/pi (repulsive) water/benzene interactions was studied with ab initio calculations on water/benzene/water systems. The energies of the systems containing two water molecules on the opposite sides of benzene molecule or as far as possible from each other were calculated using Moller-Plesset perturbation theory of the second order and cc-pVTZ and cc-pVQZ basis sets. The synergetic effects in those systems were shown to be related to direction and amount of electron transfer. The results showed that OH/pi and CH/O interactions strengthen each other for 0.42-0.44 kcal/mol. Similar effect is also present in the system containing LP/pi and OH/pi interaction, that strengthen each other for 0.42-0.46 kcal/mol. In contrast, two OH/pi interactions weaken each other for 0.40 kcal/mol, two CH/O interactions weaken each other for 0.31 kcal/mol, while two LP/pi interaction weaken each other by 0.40 kcal/mol. Weakening is also present in the system containing LP/pi and CH/O interaction, that weaken each other by 0.43 kcal/mol. Parallel alignment water/benzene interactions, where one water OH bond is parallel to benzene ring and out of benzene ring and C-H bond region, do not have a significant influence on the energy of other interactions or on each other.
PB  - Elsevier
T2  - Computational and Theoretical Chemistry
T1  - Mutual influence of parallel, CH/O, OH/pi and lone pair/pi interactions in water/benzene/water system
VL  - 1018
SP  - 59
EP  - 65
DO  - 10.1016/j.comptc.2013.05.030
ER  - 
@article{
author = "Malenov, Dušan P. and Janjić, Goran and Veljković, Dušan and Zarić, Snežana D.",
year = "2013",
abstract = "The mutual influence of OH/pi, CH/O, parallel alignment (all attractive) and lone pair/pi (repulsive) water/benzene interactions was studied with ab initio calculations on water/benzene/water systems. The energies of the systems containing two water molecules on the opposite sides of benzene molecule or as far as possible from each other were calculated using Moller-Plesset perturbation theory of the second order and cc-pVTZ and cc-pVQZ basis sets. The synergetic effects in those systems were shown to be related to direction and amount of electron transfer. The results showed that OH/pi and CH/O interactions strengthen each other for 0.42-0.44 kcal/mol. Similar effect is also present in the system containing LP/pi and OH/pi interaction, that strengthen each other for 0.42-0.46 kcal/mol. In contrast, two OH/pi interactions weaken each other for 0.40 kcal/mol, two CH/O interactions weaken each other for 0.31 kcal/mol, while two LP/pi interaction weaken each other by 0.40 kcal/mol. Weakening is also present in the system containing LP/pi and CH/O interaction, that weaken each other by 0.43 kcal/mol. Parallel alignment water/benzene interactions, where one water OH bond is parallel to benzene ring and out of benzene ring and C-H bond region, do not have a significant influence on the energy of other interactions or on each other.",
publisher = "Elsevier",
journal = "Computational and Theoretical Chemistry",
title = "Mutual influence of parallel, CH/O, OH/pi and lone pair/pi interactions in water/benzene/water system",
volume = "1018",
pages = "59-65",
doi = "10.1016/j.comptc.2013.05.030"
}
Malenov, D. P., Janjić, G., Veljković, D.,& Zarić, S. D.. (2013). Mutual influence of parallel, CH/O, OH/pi and lone pair/pi interactions in water/benzene/water system. in Computational and Theoretical Chemistry
Elsevier., 1018, 59-65.
https://doi.org/10.1016/j.comptc.2013.05.030
Malenov DP, Janjić G, Veljković D, Zarić SD. Mutual influence of parallel, CH/O, OH/pi and lone pair/pi interactions in water/benzene/water system. in Computational and Theoretical Chemistry. 2013;1018:59-65.
doi:10.1016/j.comptc.2013.05.030 .
Malenov, Dušan P., Janjić, Goran, Veljković, Dušan, Zarić, Snežana D., "Mutual influence of parallel, CH/O, OH/pi and lone pair/pi interactions in water/benzene/water system" in Computational and Theoretical Chemistry, 1018 (2013):59-65,
https://doi.org/10.1016/j.comptc.2013.05.030 . .
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