TY  - CONF
AU  - Ćirić, Miloš
AU  - Lemonnier, Clarisse
AU  - Alric, Benjamin
AU  - Dojčinović, Biljana
AU  - Avdalović, Jelena
AU  - Miletić, Srđan
AU  - Petrović, Vladimir
AU  - Milovanović, Željka
AU  - Vidaković, Danijela
AU  - Marković, Aleksandra
AU  - Rimet, Frederic
AU  - Ballot, Andreas
PY  - 2024
UR  - https://cer.ihtm.bg.ac.rs/handle/123456789/7663
AB  - Napredak u molekularnoj biologiji doveo je do snažnog razvoja molekularnih metoda u biomonitoringu. Metabarkoding je porcedura zasnovana na upotrebi DNK molekula koja može da dopuni ili čak potpuno zameni klasičan biomonitoring u skorijoj budućnosti. Sproveli smo istraživanje fitoplanktonske zajednice, važnog biološkog parametra kvaliteta, u Markovačkom jezeru sa ciljem da uporedimo tradicionalni i molekularni pristup u biomonitoringu. Ukupno smo pronašli 105 sekvenci algi i cijanobakterija, ali usled nepotpunosti baze, lista taksona dobijena metabarkodingom je nepotpuna. Iako se rezultati metabarkodinga trenutno ne mogu koristiti za procenu ekološkog statusa u Republici Srbiji, primena molekularnog pristupa u biomonitoringu je obećavajuća.
AB  - The advancement in molecular biology resultet in development of molecular methods in biomonitoring. Metabarcoding is a DNA based procedure that can supplement or even replace classical biomonitoring in the near future. We conducted a study of phytoplankton, an importtant biological quality element, in Markovačko lake aiming to compare morphological and metabacoding approach in biomonitoring. In total, 105 sequences were obtained, but due to the incompletness of the reference library the metabarcoding taxonomic list was not comprehensive. Although, the metabarcoding results can not be currently used for ecological status assessment in the Republic of Serbia, its application in biomonitoring is promissing.
PB  - Srpsko društvo za zaštitu voda
C3  - Zbornik radova 53. godišnje konferencije o aktuelnim temama korišćenja i zaštite voda - VODA 2024, 27-29. maj, 2024, Palić, Srbija,
T1  - Procena ekološkog potencijala Markovačkog jezera - novi pristup u biomonitoringu
T1  - Ecological potential assessment of Markovačko lake - a new approach in biomonitoring
SP  - 273
EP  - 282
DO  - 10.46793/VODA24.273C
ER  - 

@conference{
author = "Ćirić, Miloš and Lemonnier, Clarisse and Alric, Benjamin and Dojčinović, Biljana and Avdalović, Jelena and Miletić, Srđan and Petrović, Vladimir and Milovanović, Željka and Vidaković, Danijela and Marković, Aleksandra and Rimet, Frederic and Ballot, Andreas",
year = "2024",
abstract = "Napredak u molekularnoj biologiji doveo je do snažnog razvoja molekularnih metoda u biomonitoringu. Metabarkoding je porcedura zasnovana na upotrebi DNK molekula koja može da dopuni ili čak potpuno zameni klasičan biomonitoring u skorijoj budućnosti. Sproveli smo istraživanje fitoplanktonske zajednice, važnog biološkog parametra kvaliteta, u Markovačkom jezeru sa ciljem da uporedimo tradicionalni i molekularni pristup u biomonitoringu. Ukupno smo pronašli 105 sekvenci algi i cijanobakterija, ali usled nepotpunosti baze, lista taksona dobijena metabarkodingom je nepotpuna. Iako se rezultati metabarkodinga trenutno ne mogu koristiti za procenu ekološkog statusa u Republici Srbiji, primena molekularnog pristupa u biomonitoringu je obećavajuća., The advancement in molecular biology resultet in development of molecular methods in biomonitoring. Metabarcoding is a DNA based procedure that can supplement or even replace classical biomonitoring in the near future. We conducted a study of phytoplankton, an importtant biological quality element, in Markovačko lake aiming to compare morphological and metabacoding approach in biomonitoring. In total, 105 sequences were obtained, but due to the incompletness of the reference library the metabarcoding taxonomic list was not comprehensive. Although, the metabarcoding results can not be currently used for ecological status assessment in the Republic of Serbia, its application in biomonitoring is promissing.",
publisher = "Srpsko društvo za zaštitu voda",
journal = "Zbornik radova 53. godišnje konferencije o aktuelnim temama korišćenja i zaštite voda - VODA 2024, 27-29. maj, 2024, Palić, Srbija,",
title = "Procena ekološkog potencijala Markovačkog jezera - novi pristup u biomonitoringu, Ecological potential assessment of Markovačko lake - a new approach in biomonitoring",
pages = "273-282",
doi = "10.46793/VODA24.273C"
}

Ćirić, M., Lemonnier, C., Alric, B., Dojčinović, B., Avdalović, J., Miletić, S., Petrović, V., Milovanović, Ž., Vidaković, D., Marković, A., Rimet, F.,& Ballot, A.. (2024). Procena ekološkog potencijala Markovačkog jezera - novi pristup u biomonitoringu. in Zbornik radova 53. godišnje konferencije o aktuelnim temama korišćenja i zaštite voda - VODA 2024, 27-29. maj, 2024, Palić, Srbija,
Srpsko društvo za zaštitu voda., 273-282.
https://doi.org/10.46793/VODA24.273C

Ćirić M, Lemonnier C, Alric B, Dojčinović B, Avdalović J, Miletić S, Petrović V, Milovanović Ž, Vidaković D, Marković A, Rimet F, Ballot A. Procena ekološkog potencijala Markovačkog jezera - novi pristup u biomonitoringu. in Zbornik radova 53. godišnje konferencije o aktuelnim temama korišćenja i zaštite voda - VODA 2024, 27-29. maj, 2024, Palić, Srbija,. 2024;:273-282.
doi:10.46793/VODA24.273C .

Ćirić, Miloš, Lemonnier, Clarisse, Alric, Benjamin, Dojčinović, Biljana, Avdalović, Jelena, Miletić, Srđan, Petrović, Vladimir, Milovanović, Željka, Vidaković, Danijela, Marković, Aleksandra, Rimet, Frederic, Ballot, Andreas, "Procena ekološkog potencijala Markovačkog jezera - novi pristup u biomonitoringu" in Zbornik radova 53. godišnje konferencije o aktuelnim temama korišćenja i zaštite voda - VODA 2024, 27-29. maj, 2024, Palić, Srbija, (2024):273-282,
https://doi.org/10.46793/VODA24.273C . .

TY  - CONF
AU  - Vidaković, Danijela
AU  - Avdalović, Jelena
AU  - Dojčinović, Biljana
AU  - Marković, Aleksandra
AU  - Miletić, Srđan
AU  - Milanović, Katarina
AU  - Milovanović, Željka
AU  - Petrović, Vladimir
AU  - Zlatović, Dragana
AU  - Alric, Benjamin
AU  - Dumont, Herve
AU  - Lemonnier, Clarisse
AU  - Moatti, Antoine
AU  - Rimet, Frederic
AU  - Ballot, Andreas
AU  - Claudia Schneider, Susanne
AU  - Ćirić, Miloš
PY  - 2024
UR  - https://www.ache-pub.org.rs/index.php/HemInd/article/view/1324
UR  - https://cer.ihtm.bg.ac.rs/handle/123456789/7594
AB  - Project "Boosting Institute of Chemistry, Technology and Metallurgy in Water Biomonitoring" (BIOLAWEB) aims to strengthen the research and innovation capacity of the Institute of Chemistry, Technology and Metallurgy, National Institute of the Republic of Serbia, University of Belgrade (UB-ICTM) in biodiversity assessment and biomonitoring. UB-ICTM researchers made a noticeable contribution to the study of biodiversity, community ecology, and conservation of water bodies in South-Eastern Europe. However, a knowledge on index development and intercalibration following the EU standards for lakes and watercourse monitoring is still lacking in this geographic region. Similarly, there is a knowledge gap in DNA-based ecological status assessment in SEE.
PB  - Savez hemijskih inženjera Srbije
C3  - Hemijska industrija
T1  - Boosting Institute of Chemistry, Technology and Metallurgy in water biomonitoring - BIOLAWEB
VL  - 78
IS  - 1s
SP  - 77
UR  - https://hdl.handle.net/21.15107/rcub_cer_7594
ER  - 

@conference{
author = "Vidaković, Danijela and Avdalović, Jelena and Dojčinović, Biljana and Marković, Aleksandra and Miletić, Srđan and Milanović, Katarina and Milovanović, Željka and Petrović, Vladimir and Zlatović, Dragana and Alric, Benjamin and Dumont, Herve and Lemonnier, Clarisse and Moatti, Antoine and Rimet, Frederic and Ballot, Andreas and Claudia Schneider, Susanne and Ćirić, Miloš",
year = "2024",
abstract = "Project "Boosting Institute of Chemistry, Technology and Metallurgy in Water Biomonitoring" (BIOLAWEB) aims to strengthen the research and innovation capacity of the Institute of Chemistry, Technology and Metallurgy, National Institute of the Republic of Serbia, University of Belgrade (UB-ICTM) in biodiversity assessment and biomonitoring. UB-ICTM researchers made a noticeable contribution to the study of biodiversity, community ecology, and conservation of water bodies in South-Eastern Europe. However, a knowledge on index development and intercalibration following the EU standards for lakes and watercourse monitoring is still lacking in this geographic region. Similarly, there is a knowledge gap in DNA-based ecological status assessment in SEE.",
publisher = "Savez hemijskih inženjera Srbije",
journal = "Hemijska industrija",
title = "Boosting Institute of Chemistry, Technology and Metallurgy in water biomonitoring - BIOLAWEB",
volume = "78",
number = "1s",
pages = "77",
url = "https://hdl.handle.net/21.15107/rcub_cer_7594"
}

Vidaković, D., Avdalović, J., Dojčinović, B., Marković, A., Miletić, S., Milanović, K., Milovanović, Ž., Petrović, V., Zlatović, D., Alric, B., Dumont, H., Lemonnier, C., Moatti, A., Rimet, F., Ballot, A., Claudia Schneider, S.,& Ćirić, M.. (2024). Boosting Institute of Chemistry, Technology and Metallurgy in water biomonitoring - BIOLAWEB. in Hemijska industrija
Savez hemijskih inženjera Srbije., 78(1s), 77.
https://hdl.handle.net/21.15107/rcub_cer_7594

Vidaković D, Avdalović J, Dojčinović B, Marković A, Miletić S, Milanović K, Milovanović Ž, Petrović V, Zlatović D, Alric B, Dumont H, Lemonnier C, Moatti A, Rimet F, Ballot A, Claudia Schneider S, Ćirić M. Boosting Institute of Chemistry, Technology and Metallurgy in water biomonitoring - BIOLAWEB. in Hemijska industrija. 2024;78(1s):77.
https://hdl.handle.net/21.15107/rcub_cer_7594 .

Vidaković, Danijela, Avdalović, Jelena, Dojčinović, Biljana, Marković, Aleksandra, Miletić, Srđan, Milanović, Katarina, Milovanović, Željka, Petrović, Vladimir, Zlatović, Dragana, Alric, Benjamin, Dumont, Herve, Lemonnier, Clarisse, Moatti, Antoine, Rimet, Frederic, Ballot, Andreas, Claudia Schneider, Susanne, Ćirić, Miloš, "Boosting Institute of Chemistry, Technology and Metallurgy in water biomonitoring - BIOLAWEB" in Hemijska industrija, 78, no. 1s (2024):77,
https://hdl.handle.net/21.15107/rcub_cer_7594 .

TY  - JOUR
AU  - Trbojević, Ivana
AU  - Marković, Aleksandra
AU  - Blaženčić, Jelena
AU  - Subakov Simić, Gordana
AU  - Nowak, Petra
AU  - Ballot, Andreas
AU  - Schneider, Susanne
PY  - 2020
UR  - https://cer.ihtm.bg.ac.rs/handle/123456789/3865
AB  - Charophyte species delineation is regularly based on a set of thallus morphological character- istics, but considering pronounced phenotypic plasticity, difficulties and doubts commonly occur in Chara species determination. DNA barcoding may contribute to solving these chal- lenges. Here we characterize Chara contraria with an unusual set of morphological character- istics, and specimens morphologically resembling Chara connivens collected in Serbia, by describing their morphological traits and analysing matK barcoding results. Our results indi- cated that dioecious Chara specimens, tentatively determined as Chara “connivens” based on morphological traits, were genetically more closely related to C. globularis. These Chara
“connivens” specimens formed a sister group to a monophyletic C. globularis cluster, suggesting that it may be neither C. connivens nor C. globularis. We strongly encourage further barcoding of C. “connivens” samples from freshwater, in order to find out if there are consistent genetic differences between the dioecious freshwater C. “connivens” and monoecious C. globularis. Barcoding of matK placed the monoecious Chara specimens, which based on morphological characteristics initially were determined as C. virgata, into the C. contraria group. This indicates that the microscopic traits which commonly are used for Chara species determination some- times are misleading. In general, our study challenges the commonly used phenetic species concept in Charophyte taxonomy and illustrates the importance of molecular approaches to evaluate the validity of morphological characteristics of the plant thallus in species delineation.
PB  - Taylor & Francis
T2  - Botany Letters
T1  - Genetic and morphological variation in Chara contraria and a taxon morphologically resembling Chara connivens
VL  - 167
IS  - 2
SP  - 187
EP  - 200
DO  - 10.1080/23818107.2019.1703808
ER  - 

@article{
author = "Trbojević, Ivana and Marković, Aleksandra and Blaženčić, Jelena and Subakov Simić, Gordana and Nowak, Petra and Ballot, Andreas and Schneider, Susanne",
year = "2020",
abstract = "Charophyte species delineation is regularly based on a set of thallus morphological character- istics, but considering pronounced phenotypic plasticity, difficulties and doubts commonly occur in Chara species determination. DNA barcoding may contribute to solving these chal- lenges. Here we characterize Chara contraria with an unusual set of morphological character- istics, and specimens morphologically resembling Chara connivens collected in Serbia, by describing their morphological traits and analysing matK barcoding results. Our results indi- cated that dioecious Chara specimens, tentatively determined as Chara “connivens” based on morphological traits, were genetically more closely related to C. globularis. These Chara
“connivens” specimens formed a sister group to a monophyletic C. globularis cluster, suggesting that it may be neither C. connivens nor C. globularis. We strongly encourage further barcoding of C. “connivens” samples from freshwater, in order to find out if there are consistent genetic differences between the dioecious freshwater C. “connivens” and monoecious C. globularis. Barcoding of matK placed the monoecious Chara specimens, which based on morphological characteristics initially were determined as C. virgata, into the C. contraria group. This indicates that the microscopic traits which commonly are used for Chara species determination some- times are misleading. In general, our study challenges the commonly used phenetic species concept in Charophyte taxonomy and illustrates the importance of molecular approaches to evaluate the validity of morphological characteristics of the plant thallus in species delineation.",
publisher = "Taylor & Francis",
journal = "Botany Letters",
title = "Genetic and morphological variation in Chara contraria and a taxon morphologically resembling Chara connivens",
volume = "167",
number = "2",
pages = "187-200",
doi = "10.1080/23818107.2019.1703808"
}

Trbojević, I., Marković, A., Blaženčić, J., Subakov Simić, G., Nowak, P., Ballot, A.,& Schneider, S.. (2020). Genetic and morphological variation in Chara contraria and a taxon morphologically resembling Chara connivens. in Botany Letters
Taylor & Francis., 167(2), 187-200.
https://doi.org/10.1080/23818107.2019.1703808

Trbojević I, Marković A, Blaženčić J, Subakov Simić G, Nowak P, Ballot A, Schneider S. Genetic and morphological variation in Chara contraria and a taxon morphologically resembling Chara connivens. in Botany Letters. 2020;167(2):187-200.
doi:10.1080/23818107.2019.1703808 .

Trbojević, Ivana, Marković, Aleksandra, Blaženčić, Jelena, Subakov Simić, Gordana, Nowak, Petra, Ballot, Andreas, Schneider, Susanne, "Genetic and morphological variation in Chara contraria and a taxon morphologically resembling Chara connivens" in Botany Letters, 167, no. 2 (2020):187-200,
https://doi.org/10.1080/23818107.2019.1703808 . .

TY  - CONF
AU  - Schneider, Susanne
AU  - Ballot, Andreas
AU  - Vesić, Aleksandra
AU  - Trbojević, Ivana
PY  - 2018
UR  - https://cer.ihtm.bg.ac.rs/handle/123456789/7049
AB  - Most field charophytologists have experienced that the morphology of Chara specimen can be intermediate” between two different species. We collected a Chara sample in lake Sava, close to Belgrade, Serbia. The habitus of this specimen resembled C. contraria, but the microscopic details (“spines”, stipulodes) resembled C. virgata. Preliminary analysis of the matK gene, however, clearly place the sample into C. contraria. This means that C. contraria sometimes may have stipulodes where only the upper row is elongated. We also collected a sample which orphologically resembled C. connivens in Dulin pond (44°51’11.5” N 21°17’52.2” E), Serbia. The sample was clearly dioecious, and we analysed male and female samples. Preliminary analyses of the matK gene placed this sample into a separate sub-cluster of C. globularis (i.e. not together with C. connivens, but an own sub-group within C. globularis). We will present the most recent results on these specimens.
PB  - The International Research Group on Charopytes (IRGC)
C3  - 22th Meeting of The Group of European Charophytologists (GEC22), Programme & Abstracts, 17-21 September 2018, Palermo, Italy
T1  - Chara globularis – Chara connivens – Chara contraria: more insights from morphology and genetics
SP  - 32
EP  - 32
UR  - https://hdl.handle.net/21.15107/rcub_cer_7049
ER  - 

@conference{
author = "Schneider, Susanne and Ballot, Andreas and Vesić, Aleksandra and Trbojević, Ivana",
year = "2018",
abstract = "Most field charophytologists have experienced that the morphology of Chara specimen can be intermediate” between two different species. We collected a Chara sample in lake Sava, close to Belgrade, Serbia. The habitus of this specimen resembled C. contraria, but the microscopic details (“spines”, stipulodes) resembled C. virgata. Preliminary analysis of the matK gene, however, clearly place the sample into C. contraria. This means that C. contraria sometimes may have stipulodes where only the upper row is elongated. We also collected a sample which orphologically resembled C. connivens in Dulin pond (44°51’11.5” N 21°17’52.2” E), Serbia. The sample was clearly dioecious, and we analysed male and female samples. Preliminary analyses of the matK gene placed this sample into a separate sub-cluster of C. globularis (i.e. not together with C. connivens, but an own sub-group within C. globularis). We will present the most recent results on these specimens.",
publisher = "The International Research Group on Charopytes (IRGC)",
journal = "22th Meeting of The Group of European Charophytologists (GEC22), Programme & Abstracts, 17-21 September 2018, Palermo, Italy",
title = "Chara globularis – Chara connivens – Chara contraria: more insights from morphology and genetics",
pages = "32-32",
url = "https://hdl.handle.net/21.15107/rcub_cer_7049"
}

Schneider, S., Ballot, A., Vesić, A.,& Trbojević, I.. (2018). Chara globularis – Chara connivens – Chara contraria: more insights from morphology and genetics. in 22th Meeting of The Group of European Charophytologists (GEC22), Programme & Abstracts, 17-21 September 2018, Palermo, Italy
The International Research Group on Charopytes (IRGC)., 32-32.
https://hdl.handle.net/21.15107/rcub_cer_7049

Schneider S, Ballot A, Vesić A, Trbojević I. Chara globularis – Chara connivens – Chara contraria: more insights from morphology and genetics. in 22th Meeting of The Group of European Charophytologists (GEC22), Programme & Abstracts, 17-21 September 2018, Palermo, Italy. 2018;:32-32.
https://hdl.handle.net/21.15107/rcub_cer_7049 .

Schneider, Susanne, Ballot, Andreas, Vesić, Aleksandra, Trbojević, Ivana, "Chara globularis – Chara connivens – Chara contraria: more insights from morphology and genetics" in 22th Meeting of The Group of European Charophytologists (GEC22), Programme & Abstracts, 17-21 September 2018, Palermo, Italy (2018):32-32,
https://hdl.handle.net/21.15107/rcub_cer_7049 .